Computational Systems Biology and Bioinformatics Lab


 

SMAP: SMAP is a software package for protein functional site comparison and database search developed in UCSD under the support of National Institutes of Heath (NIH) grant GM078596. It can be executed on both Windows and LINUX operating systems. SMAP is free for academic users. Commercial users please contact UCSD Technology Transfer Office for license information. Please click here for more information on its scope of applications and availability.

SSKDSP: SSDKSP is a scalable implementation of Single Source K Diverse Shortest Paths Algorithm.

REMAP: : REMAP is a fast and accurate algorithm for the prediction of binary relations,e.g. drug-target association, using a novel dual-regularized one-class collaborative filtering.

COSINE: COSINE is an improved algorithm for multi-target compound screening and novel relation detection.

JDINAC: JDINAC is an algorithm for network-based feature selection and classification using high-dimensional sparse data.